species:   Rhsol
pid:       PID0461
parent:    Rhi-milR-12
paralog:   
locus:     KB317696.1:2014702-2014815
matures:   ['ACGGUAACUGUGGCAUGGGGUGA', 'ACCACAUGCCCAUUACCUUA']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317696.1:2014702-2014815

3 out of bounds
20 alignments
19 proper strand
12 stranded perfect matches

                *******************                                **********************                         
UCUUUUCUUGUUCACCACAUGCCCAUUACCUUAUGGCAUGCUCCCUUAUCUCUUGCCUAACCUCUCCUAUAACGGUAACUGUGGCAUGGGGUGAACAUACAGGUGCCUGGAUAU
........((((((((.(((((((((((((((((((((...............))))...........)))).))))).)).)))))).))))))))..(((....))).....
-----------------------------------------------------------------------ACGGUAACUGUGGCAUGGGGUGA-------------------- l=23 a=1 c
-------------ACCACAUGCCCAUUACCUUA--------------------------------------------------------------------------------- l=20 a=0 c*
---------------------------------------------------------------------UAACGGUAACUGUGGCAUGG------------------------- l=20 a=4 ma
------------------AUGCCCAUUACCUUAUG------------------------------------------------------------------------------- l=17 a=0 ma*

----------------------------------------------------------------UCCUAUAACGGUAACUGUGGC----------------------------- l=21 a=1 
---------------------------------------------------------------------UAACGGUAACUGUGGCcUGG------------------------- l=20 a=1 
---------------------------------------------------------------------UAACGGUAACUGUGGCAUGu------------------------- l=20 a=2 
---------------------------------------------------------------------UAACGGUAACUGUGGCAUGG------------------------- l=20 a=4 (ma)
---------------------------------------------------------------------UAACGGUAAaUGUGGCAUGGG------------------------ l=21 a=1 
---------------------------------------------------------------------UAACGGUAACUGUGGCAUGGcG----------------------- l=22 a=1 
---------------------------------------------------------------------UAACGGUAACUGUGGCAUGGGGUG--------------------- l=24 a=1 
---------------------------------------------------------------------UAACGGUAACUGUGGCAUGGGGUGAACA----------------- l=28 a=1 
----------------------------------------------------------------------AACGGUAACUGUGGCAUGGGGUG--------------------- l=23 a=1 
----------------------------------------------------------------------AACGGUAACUGUGGCAUGGGGUGAu------------------- l=25 a=1 
-----------------------------------------------------------------------ACGGUAACUGUGGCAUGGGGUGA-------------------- l=23 a=1 (c)
-----------------------------------------------------------------------ACGGUAACUGUGGCAUGGGGUGAAC------------------ l=25 a=2 
------------------------------------------------------------------------CGGUAACUGUGGCAUGGGGUGAAu------------------ l=24 a=1 
------------------------------------------------------------------------CGGUAACUGUGGCAUGGGGUGAACAUA--------------- l=27 a=1 

mb-01011
ax-1011011
ku-01
ss-101111111000
fn-011
